Keith A. Baggerly: search on Z-Library

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1

Information-Theoretic Analysis of Neural Coding

Don H. Johnson, Charlotte M. Gruner, Keith Baggerly, Chandran Seshagiri

Journal:

Journal of Computational Neuroscience

Year:

2001

Language:

english

File:

PDF, 491 KB

english, 2001

2

Creating synthetic baseline populations

Richard J. Beckman, Keith A. Baggerly, Michael D. McKay

Journal:

Transportation Research Part A: Policy and Practice

Year:

1996

Language:

english

File:

PDF, 1.36 MB

english, 1996

3

Empirical Likelihood as a Goodness-of-Fit Measure

Keith A. Baggerly

Journal:

Year:

1998

Language:

english

File:

PDF, 1.05 MB

english, 1998

4

Effect of Vitamin D and Calcium Supplementation on Cancer Incidence in Older Women

Lappe, Joan, Watson, Patrice, Travers-Gustafson, Dianne, Recker, Robert, Garland, Cedric, Gorham, Edward, Baggerly, Keith, McDonnell, Sharon L.

Journal:

JAMA The Journal of the American Medical Association

Year:

2017

Language:

english

File:

PDF, 407 KB

english, 2017

5

Deriving chemosensitivity from cell lines: Forensic bioinformatics and reproducible research in high-throughput biology

Baggerly, Keith A., Coombes, Kevin R.

Journal:

The Annals of Applied Statistics

Year:

2009

Language:

english

File:

PDF, 1017 KB

english, 2009

6

Comparison of sample-labeling techniques in DNA microarray experiments

Keith Baggerly, Rahul Mitra, Rachel Grier, Dina Medhane, Guillermina Lozano, Mini Kapoor

Journal:

Analytica Chimica Acta

Year:

2004

Language:

english

File:

PDF, 217 KB

english, 2004

7

Sources of nonlinearity in cDNA microarray expression measurements

Latha Ramdas, Kevin R Coombes, Keith Baggerly, Lynne Abruzzo…

Journal:

Year:

2001

Language:

english

File:

PDF, 2.29 MB

english, 2001

8

Probability binning and testing agreement between multivariate immunofluorescence histograms: Extending the chi-squared test

Keith A. Baggerly

Journal:

Cytometry Part A

Year:

2001

Language:

english

File:

PDF, 156 KB

english, 2001

9

Obtaining reliable information from minute amounts of RNA using cDNA microarrays

Limei Hu, Jing Wang, Keith Baggerly, Hua Wang, Gregory N Fuller, Stanley R Hamilton, Kevin R Coombes, Wei Zhang

Journal:

Year:

2002

Language:

english

File:

PDF, 762 KB

english, 2002

10

Adaptive Importance Sampling on Discrete Markov Chains

Craig Kollman, Keith Baggerly, Dennis Cox and Rick Picard

Journal:

The Annals of Applied Probability

Year:

1999

Language:

english

File:

PDF, 1.86 MB

english, 1999

11

Cross-Validation of Multivariate Densities

Sain, Stephan R., Baggerly, Keith A., Scott, David W.

Journal:

Journal of the American Statistical Association

Year:

1994

Language:

english

File:

PDF, 942 KB

english, 1994

12

Exponential Convergence of Adaptive Importance Sampling for Markov Chains

Keith Baggerly, Dennis Cox and Rick Picard

Journal:

Journal of Applied Probability

Year:

2000

Language:

english

File:

PDF, 1.15 MB

english, 2000

13

Bayesian Reliability Analysis of High-Reliability Systems of Binomial and Poisson Subsystems

Martz, Harry F., Baggerly, Keith A.

Journal:

International Journal of Reliability Quality and Safety Engineering

Year:

1997

Language:

english

File:

PDF, 1.96 MB

english, 1997

14

Changes in the Dietary Inflammatory Index Over Time and Cancer Development Within Rural Post-Menopausal Women

Dougherty, Mariah, Lappe, Joan, Watson, Patrice, Travers-Gustafson, Dianne, Recker, Robert, Garland, Cedric, Gorham, Edward, Baggerly, Keith, McDonnell, Sharon, Ma, Jihyun, Lyden, Elizabeth, Hanson, C

Journal:

Current Developments in Nutrition

Year:

2020

File:

PDF, 72 KB

2020

15

Altered MEF2 isoforms in myotonic dystrophy and other neuromuscular disorders

Linda L. Bachinski, Mario Sirito, Maria Böhme, Keith A. Baggerly, Bjarne Udd, Ralf Krahe

Journal:

Year:

2010

Language:

english

File:

PDF, 402 KB

english, 2010

16

Detection of Bladder Cancer in Urine Sediments by a Novel Multicolor Fluorescence In Situ Hybridization (Quartet) Test

Zhang, Shizhen, Wang, Yan, Bondaruk, Jolanta, Majewski, Tadeusz, Yao, Hui, Lee, Sangkyou, Lee, June Goo, Cogdell, David, Lotan, Yair, Dinney, Colin, Wei, Peng, Baggerly, Keith, Czerniak, Bogdan

Journal:

European Urology Focus

Year:

2018

Language:

english

File:

PDF, 3.45 MB

english, 2018

17

Cross-Validation of Multivariate Densities

Stephan R. Sain, Keith A. Baggerly and David W. Scott

Journal:

Journal of the American Statistical Association

Year:

1994

Language:

english

File:

PDF, 1.39 MB

english, 1994

18

ChemInform Abstract: FORMATION OF MU-CYANO SPECIES IN REACTIONS BETWEEN BIS(HISTIDINATO)COBALT AND HEXACYANOFERRATE COMPLEXES

BAGGER, SVEN, GIBSON, KEITH

Journal:

Chemischer Informationsdienst

Year:

1974

File:

PDF, 209 KB

1974

19

Bayesian Shrinkage Estimation of the Relative Abundance of mRNA Transcripts Using SAGE

Jeffrey S. Morris, Keith A. Baggerly and Kevin R. Coombes

Journal:

Year:

2003

Language:

english

File:

PDF, 2.10 MB

english, 2003

20

Identifying and Quantifying Sources of Variation in Microarray Data Using High-Density cDNA Membrane Arrays

Coombes, Kevin R., Highsmith, W. Edward, Krogmann, Tammy A., Baggerly, Keith A., Stivers, David N., Abruzzo, Lynne V.

Journal:

Journal of Computational Biology

Year:

2002

Language:

english

File:

PDF, 444 KB

english, 2002

21

Surface Adjustment of Reverse Phase Protein Arrays using Positive Control Spots

Neeley,, Neeley,, Keith A. Baggerly,, Kornblau,

Journal:

Cancer Informatics

Year:

2012

Language:

english

File:

PDF, 3.30 MB

english, 2012

22

Regulating the stability and localization of CDK inhibitor p27 Kip1 via CSN6-COP1 axis

Choi, Hyun Ho, Guma, Sergei, Fang, Lekun, Phan, Liem, Ivan, Cristina, Baggerly, Keith, Sood, Anil, Lee, Mong-Hong

Journal:

Year:

2015

Language:

english

File:

PDF, 1.03 MB

english, 2015

23

Surface PD-L1, E-cadherin, CD24, and VEGFR2 as markers of epithelial cancer stem cells associated with rapid tumorigenesis

Jinesh, Goodwin G., Manyam, Ganiraju C., Mmeje, Chinedu O., Baggerly, Keith A., Kamat, Ashish M.

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 9.05 MB

english, 2017

24

Predicting novel therapies and targets: Regulation of Notch3 by the bromodomain protein BRD4

Villar-Prados, Alejandro, Wu, Sherry Y, Court, Karem A, MA, Shaolin, LaFargue, Christopher, Chowdhury, Mamur A, Engelhardt, Margaret I, Ivan, Cristina, Ram, Prahlad T., Wang, Ying, Baggerly, Keith, Ro

Journal:

Molecular Cancer Therapeutics

Year:

2018

Language:

english

File:

PDF, 15.53 MB

english, 2018

25

A comprehensive approach to the analysis of matrix-assisted laser desorption/ionization-time of flight proteomics spectra from serum samples

Keith A. Baggerly, Jeffrey S. Morris, Jing Wang, David Gold, Lian-Chun Xiao, Kevin R. Coombes

Journal:

Year:

2003

Language:

english

File:

PDF, 141 KB

english, 2003

26

High-resolution whole-organ mapping with SNPs and its significance to early events of carcinogenesis

Tuziak, Tomasz, Jeong, Joon, Majewski, Tadeusz, Kim, Mi-Sook, Steinberg, Jordan, Wang, Zhi, Yoon, Dong-Sup, Kuang, Tang C, Baggerly, Keith, Johnston, Dennis

Journal:

Laboratory Investigation

Year:

2005

Language:

english

File:

PDF, 936 KB

english, 2005

27

Serum proteomics profiling—a young technology begins to mature

Coombes, Kevin R, Morris, Jeffrey S, Hu, Jianhua, Edmonson, Sarah R, Baggerly, Keith A

Journal:

Nature Biotechnology

Year:

2005

Language:

english

File:

PDF, 141 KB

english, 2005

28

DERIVING CHEMOSENSITIVITY FROM CELL LINES: FORENSIC BIOINFORMATICS AND REPRODUCIBLE RESEARCH IN HIGH-THROUGHPUT BIOLOGY

Keith A. Baggerly and Kevin R. Coombes

Journal:

The Annals of Applied Statistics

Year:

2009

Language:

english

File:

PDF, 2.91 MB

english, 2009

29

Elevation of TP53 Autoantibody Prior to CA125 in Preclinical Invasive Epithelial Ovarian Cancer

Yang, Wei-Lei, Gentry-Maharaj, Aleksandra, Simmons, Archana R., Ryan, Andy, Fourkala, Evangelia O, Lu, Zhen, Baggerly, Keith A., Zhao, Yang, Lu, Karen, Bowtell, David D.L., Jacobs, Ian, Skates, Steven

Journal:

Clinical Cancer Research

Year:

2017

Language:

english

File:

PDF, 1.33 MB

english, 2017

30

Pan-cancer genomic analysis links 3’UTR DNA methylation with increased gene expression in T cells

McGuire, Michael H., Herbrich, Shelley M., Dasari, Santosh K., Wu, Sherry Y., Wang, Ying, Rupaimoole, Rajesha, Lopez-Berestein, Gabriel, Baggerly, Keith A., Sood, Anil K.

Journal:

Year:

2019

Language:

english

File:

PDF, 2.75 MB

english, 2019

31

Differences in aberrant expression and splicing of sarcomeric proteins in the myotonic dystrophies DM1 and DM2

Anna Vihola, Linda L. Bachinski, Mario Sirito, Shodimu-Emmanuel Olufemi, Shohrae Hajibashi, Keith A. Baggerly, Olayinka Raheem, Hannu Haapasalo, Tiina Suominen, Jeanette Holmlund-Hampf, Anders Paetau,

Journal:

Acta Neuropathologica

Year:

2010

Language:

english

File:

PDF, 536 KB

english, 2010

32

Clinical evaluation of chemotherapy response predictors developed from breast cancer cell lines

Cornelia Liedtke, Jing Wang, Attila Tordai, William F. Symmans, Gabriel N. Hortobagyi, Ludwig Kiesel, Kenneth Hess, Keith A. Baggerly, Kevin R. Coombes, Lajos Pusztai

Journal:

Breast Cancer Research and Treatment

Year:

2010

Language:

english

File:

PDF, 272 KB

english, 2010

33

Overdispersed logistic regression for SAGE: Modelling multiple groups and covariates

Keith A Baggerly, Li Deng, Jeffrey S Morris, C Marcelo Aldaz

Journal:

BMC Bioinformatics

Year:

2004

Language:

english

File:

PDF, 329 KB

english, 2004

34

Improved peak detection and quantification of mass spectrometry data acquired from surface-enhanced laser desorption and ionization by denoising spectra with the undecimated discrete wavelet transform

Kevin R. Coombes, Spiridon Tsavachidis, Jeffrey S. Morris, Keith A. Baggerly, Mien-Chie Hung, Henry M. Kuerer

Journal:

Year:

2005

Language:

english

File:

PDF, 657 KB

english, 2005

35

Oral MEK 1/2 Inhibitor Trametinib in Combination with AKT Inhibitor GSK2141795 in Patients with Acute Myeloid Leukemia with RAS Mutations: A Phase II Study

Ragon, Brittany Knick, Odenike, Olatoyosi, Baer, Maria R., Stock, Wendy, Borthakur, Gautam, Patel, Keyur, Han, Lina, Chen, Helen, Ma, Helen, Joseph, Loren, Zhao, Yang, Baggerly, Keith, Konopleva, Mari

Journal:

Clinical Lymphoma Myeloma and Leukemia

Year:

2019

Language:

english

File:

PDF, 7.81 MB

english, 2019

36

Tackling the widespread and critical impact of batch effects in high-throughput data

Leek, Jeffrey T., Scharpf, Robert B., Bravo, Héctor Corrada, Simcha, David, Langmead, Benjamin, Johnson, W. Evan, Geman, Donald, Baggerly, Keith, Irizarry, Rafael A.

Journal:

Nature Reviews Genetics

Year:

2010

Language:

english

File:

PDF, 450 KB

english, 2010

37

Cholangiocarcinoma With FGFR Genetic Aberrations: A Unique Clinical Phenotype

Jain, Apurva, Borad, Mitesh J., Kelley, Robin Kate, Wang, Ying, Abdel-Wahab, Reham, Meric-Bernstam, Funda, Baggerly, Keith A., Kaseb, Ahmed Omar, Al-shamsi, Humaid O., Ahn, Daniel H., DeLeon, Thomas,

Journal:

JCO Precision Oncology

Year:

2018

File:

PDF, 701 KB

2018

38

Modeling significance and reproducibility on high-density cDNA microarrays

Baggerly, Keith, Coombes, Kevin, Hess, Kenneth, Stivers, David, Abruzzo, Lynne, Zhang, Wei

Journal:

Nature Genetics

Year:

2001

Language:

english

File:

PDF, 28 KB

english, 2001

39

Different Changes in Protein and Phosphoprotein Levels Result from Serum Starvation of High-Grade Glioma and Adenocarcinoma Cell Lines

Levin, Victor A., Panchabhai, Sonali C., Shen, Li, Kornblau, Steven M., Qiu, Yihua, Baggerly, Keith A.

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 3.51 MB

english, 2010

40

[IEEE 2015 54th IEEE Conference on Decision and Control (CDC) - Osaka, Japan (2015.12.15-2015.12.18)] 2015 54th IEEE Conference on Decision and Control (CDC) - Optimized prediction of extreme treatment outcomes in ovarian cancer

Misganaw, Burook, Ahsen, Eren, Singh, Nitin, Baggerly, Keith A., Unruh, Anna, White, Michael A., Vidyasagar, M.

Year:

2015

Language:

english

File:

PDF, 205 KB

english, 2015

41

Dissecting Pathway Disturbances Using Network Topology and Multi-platform Genomics Data

Zhang, Yuping, Linder, M. Henry, Shojaie, Ali, Ouyang, Zhengqing, Shen, Ronglai, Baggerly, Keith A., Baladandayuthapani, Veerabhadran, Zhao, Hongyu

Journal:

Statistics in Biosciences

Year:

2017

Language:

english

File:

PDF, 737 KB

english, 2017

42

Prevalence of Aflatoxin-associated TP53R249S mutation in Hepatocellular Carcinoma in Hispanics in South Texas

Jiao, Jingjing, Niu, Weibo, Wang, Ying, Baggerly, Keith A., Ye, Yuanqing, Wu, Xifeng, Davenport, Dewitt, Almeda, Jose Luis, Betancourt-Garcia, Monica M., Forse, R. Armour, Stevenson, Heather L., Watt,

Journal:

Cancer Prevention Research

Year:

2017

Language:

english

File:

PDF, 3.29 MB

english, 2017

43

Blasted Cell Line Names

Wang, Jing, Byers, Lauren A., Yordy, John S., Liu, Wenbin, Shen, Li, Baggerly, Keith A., Giri, Uma, Myers, Jeffrey N., Ang, K. Kian, Story, Michael D., Girard, Luc, Minna, John D., Heymach, John V., C

Journal:

Cancer Informatics

Year:

2010

Language:

english

File:

PDF, 413 KB

english, 2010

44

Global analysis of aberrant pre-mRNA splicing in glioblastoma using exon expression arrays

Hannah C Cheung, Keith A Baggerly, Spiridon Tsavachidis, Linda L Bachinski, Valerie L Neubauer, Tamara J Nixon, Kenneth D Aldape, Gilbert J Cote, Ralf Krahe

Journal:

Year:

2008

Language:

english

File:

PDF, 1.25 MB

english, 2008

45

Pharmacoproteomic analysis of prechemotherapy and postchemotherapy plasma samples from patients receiving neoadjuvant or adjuvant chemotherapy for breast carcinoma

Lajos Pusztai, Betsy W. Gregory, Keith A. Baggerly, Bo Peng, John Koomen, Henry M. Kuerer, Francisco J. Esteva, W. Fraser Symmans, Peter Wagner, Gabriel N. Hortobagyi, Christine Laronga, O. John Semme

Journal:

Year:

2004

Language:

english

File:

PDF, 303 KB

english, 2004

46

Bayesian Shrinkage Estimation of the Relative Abundance of mRNA Transcripts Using SAGE

Jeffrey S. Morris, Keith A. Baggerly, Kevin R. Coombes

Journal:

Year:

2003

Language:

english

File:

PDF, 357 KB

english, 2003

47

Functional CAR models for large spatially correlated functional datasets

Zhang, Lin, Baladandayuthapani, Veerabhadran, Zhu, Hongxiao, Baggerly, Keith A., Majewski, Tadeusz, Czerniak, Bogdan A., Morris, Jeffrey S.

Journal:

Journal of the American Statistical Association

Year:

2015

Language:

english

File:

PDF, 3.64 MB

english, 2015

48

Diagnostic protein discovery using proteolytic peptide targeting and identification

John M. Koomen, Haitao Zhao, Donghui Li, James Abbruzzese, Keith Baggerly, Ryuji Kobayashi

Journal:

Rapid Communications in Mass Spectrometry

Year:

2004

Language:

english

File:

PDF, 498 KB

english, 2004

49

Epigenetic analysis of the Notch superfamily in high-grade serous ovarian cancer

Ivan, Cristina, Hu, Wei, Bottsford-Miller, Justin, Zand, Behrouz, Dalton, Heather J., Liu, Tao, Huang, Jie, Nick, Alpa M., Lopez-Berestein, Gabriel, Coleman, Robert L., Baggerly, Keith A., Sood, Anil

Journal:

Gynecologic Oncology

Year:

2013

Language:

english

File:

PDF, 873 KB

english, 2013

50

Genetic Polymorphisms of CFH and ARMS2 Do Not Predict Response to Antioxidants and Zinc in Patients with Age-Related Macular Degeneration

Assel, Melissa J., Li, Fan, Wang, Ying, Allen, Andrew S., Baggerly, Keith A., Vickers, Andrew J.

Journal:

Year:

2017

Language:

english

File:

PDF, 273 KB

english, 2017

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